IQ-TREE multicore version 1.6.12 for Linux 64-bit built Aug 15 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    fermat (AVX2, FMA3, 1009 GB RAM)
Command: ../../iqtree -s Pettalidae_28S_mafft_BMGE.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    13425 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Jun 15 23:13:15 2022
Kernel:  AVX+FMA - 1 threads (128 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 128 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Pettalidae_28S_mafft_BMGE.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 122 sequences with 2075 columns, 551 distinct patterns
265 parsimony-informative, 255 singleton sites, 1555 constant sites
                                             Gap/Ambiguity  Composition  p-value
   1  Limulus_polyphemus                             1.49%    passed     63.13%
   2  Metasiro_savannahensis_MCZ-134557              1.20%    passed     94.50%
   3  Cyphophthalmus_duricorius_MCZ-135009          39.18%    passed     47.74%
   4  Paramiopsalis_ramulosus_MCZ-135006             0.96%    passed     96.95%
   5  Parasiro_coiffaiti_MCZ-132372                  0.77%    passed     87.74%
   6  Parasiro_minor_MCZ-132374                      0.72%    passed     96.42%
   7  Siro_exilis_MCZ-134551                         4.00%    passed     94.58%
   8  Siro_rubens_MCZ-132391                         0.87%    passed     77.53%
   9  Suzukielus_sauteri_MCZ-132256                  0.92%    passed     88.56%
  10  Archaeopurcellia_eureka_MCZ-162249             2.31%    passed     95.00%
  11  Aoraki_westlandica_MCZ-134653                  0.24%    passed     99.36%
  12  Aoraki_crypta_MCZ-101289                       0.00%    passed     99.92%
  13  Aoraki_denticulata_denticulata_MCZ-134642      1.59%    passed     99.05%
  14  Aoraki_denticulata_denticulata_MCZ-134646      0.00%    passed     99.95%
  15  Aoraki_denticulata_denticulata_MCZ-134639_1    0.00%    passed     99.88%
  16  Aoraki_denticulata_denticulata_MCZ-134659_1    0.00%    passed     99.95%
  17  Aoraki_denticulata_major_MCZ-134644            0.00%    passed     99.95%
  18  Aoraki_denticulata_major_MCZ-35669            38.94%    passed     29.19%
  19  Aoraki_grandis_MCZ-134652                      0.00%    passed     99.78%
  20  Aoraki_granulosa_MCZ-134675                    0.00%    passed     99.87%
  21  Aoraki_granulosa_MCZ-134684                    0.00%    passed     99.87%
  22  Aoraki_healyi_MCZ-134638                       0.00%    passed     99.91%
  23  Aoraki_inerma_MCZ-134648                       0.00%    passed     99.87%
  24  Aoraki_longitarsa_MCZ-134656_1                 0.00%    passed     99.95%
  25  Aoraki_longitarsa_MCZ-134656_2                 0.00%    passed     99.95%
  26  Aoraki_longitarsa_MCZ-35659                    0.05%    passed     99.98%
  27  Aoraki_longitarsa_MCZ-35660                    0.05%    passed     99.98%
  28  Aoraki_longitarsa_CMNZ                         0.00%    passed     99.98%
  29  Aoraki_tumidata_MCZ-133838                    27.42%    passed     93.17%
  30  Austropurcellia_acuta_MCZ-134701               0.00%    passed     99.86%
  31  Austropurcellia_arcticosa_MCZ-132325           5.45%    passed     99.81%
  32  Austropurcellia_cadens_CASENT9035046           0.05%    passed     99.95%
  33  Austropurcellia_clousei_MCZ-132339             1.35%    passed     98.36%
  34  Austropurcellia_culminis_MCZ-132322            0.00%    passed     99.97%
  35  Austropurcellia_daviesae_MCZ-132323            0.00%    passed     99.95%
  36  Austropurcellia_despectata_MCZ-132324          0.00%    passed     99.91%
  37  Austropurcellia_giribeti_MCZ-132337            5.06%    passed     99.96%
  38  Austropurcellia_giribeti_MCZ-134696            0.00%    passed     99.78%
  39  Austropurcellia_scoparia_MCZ-134700            0.00%    passed     99.97%
  40  Austropurcellia_sharmai_MCZ-134698             0.00%    passed     99.80%
  41  Austropurcellia_tholei_MCZ-134697              0.00%    passed     99.99%
  42  Austropurcellia_vicina_MCZ-132318              0.00%    passed     99.60%
  43  Austropurcellia_vicina_MCZ-132334              1.98%    passed     98.38%
  44  Chileogovea_jocasta_MCZ-134713                 0.05%    passed     99.77%
  45  Chileogovea_jocasta_MCZ-134714                 0.05%    passed     99.77%
  46  Chileogovea_jocasta_MCZ-134715                 0.05%    passed     99.77%
  47  Chileogovea_oedipus_MCZ-134709                 0.05%    passed     99.19%
  48  Chileogovea_oedipus_MCZ-134710                 0.05%    passed     98.68%
  49  Chileogovea_oedipus_MCZ-134711                11.28%    passed     67.33%
  50  Chileogovea_oedipus_MCZ-134712                 0.05%    passed     96.86%
  51  Karripurcellia_harveyi_MCZ-132345              0.00%    passed     99.82%
  52  Karripurcellia_peckorum_MCZ-134719             0.00%    passed     99.82%
  53  Karripurcellia_peckorum_MCZ-134720             0.00%    passed     99.82%
  54  Karripurcellia_peckorum_MCZ-134721             0.00%    passed     99.82%
  55  Karripurcellia_peckorum_MCZ-134725             0.00%    passed     99.82%
  56  Karripurcellia_peckorum_MCZ-134726             0.00%    passed     99.60%
  57  Neopurcellia_salmoni_MCZ-29317                 0.05%    passed     99.94%
  58  Neopurcellia_salmoni_MCZ-133839                0.05%    passed     99.95%
  59  Neopurcellia_salmoni_MCZ-134739               46.31%    passed     54.86%
  60  Neopurcellia_salmoni_MCZ-134741                0.05%    passed     99.95%
  61  Parapurcellia_amatola_MCZ-133841               0.00%    passed     99.35%
  62  Parapurcellia_convexa_MCZ-134744               0.00%    passed     99.75%
  63  Parapurcellia_convexa_MCZ-128902               0.00%    passed     99.95%
  64  Parapurcellia_fissa_MCZ-134745                 0.00%    passed     99.84%
  65  Parapurcellia_minuta_MCZ-134747                0.00%    passed     99.35%
  66  Parapurcellia_monticola_MCZ-60357_1            0.00%    passed     98.44%
  67  Parapurcellia_monticola_MCZ-60357_2            0.00%    passed     98.44%
  68  Parapurcellia_monticola_MCZ-134751             0.00%    passed     98.44%
  69  Parapurcellia_peregrinator_MCZ-128901          0.00%    passed     99.43%
  70  Parapurcellia_rumpiana_MCZ-134748              0.10%    passed     97.77%
  71  Parapurcellia_silvicola_MCZ-134742_1           0.05%    passed     99.82%
  72  Parapurcellia_silvicola_MCZ-134742_2           0.05%    passed     99.82%
  73  Parapurcellia_staregai_MCZ-134746              0.00%    passed     99.60%
  74  Parapurcellia_nsp_Limpopo_MCZ-128900           0.00%    passed     99.97%
  75  Pettalus_thwaitesi_DNA101223                   0.05%    passed     95.78%
  76  Pettalus_sp_MCZ-132353                         0.00%    passed     96.30%
  77  Pettalus_sp_MCZ-132354                         0.00%    passed     98.79%
  78  Pettalus_sp_MCZ-132356                         0.29%    passed     96.77%
  79  Pettalus_sp_MCZ-132357                         0.00%    passed     97.41%
  80  Pettalus_sp_MCZ-132359                         0.00%    passed     98.79%
  81  Pettalus_sp_MCZ-132360                         0.00%    passed     92.45%
  82  Pettalus_sp_MCZ-134967                        29.69%    passed     96.83%
  83  Purcellia_argasiformis_MCZ-134759              0.00%    passed     99.32%
  84  Purcellia_argasiformis_MCZ-134762              0.00%    passed     99.30%
  85  Purcellia_griswoldi_MCZ-128898                 0.00%    passed     99.75%
  86  Purcellia_griswoldi_MCZ-134756                 0.00%    passed     99.75%
  87  Purcellia_illustrans_MCZ-60635                 0.00%    passed     99.63%
  88  Purcellia_illustrans_MCZ-128896                0.00%    passed     99.63%
  89  Purcellia_illustrans_MCZ-134753                7.08%    passed     91.73%
  90  Purcellia_illustrans_MCZ-134754                0.00%    passed     99.63%
  91  Purcellia_leleupi_MCZ-129098                   0.00%    passed     99.81%
  92  Purcellia_sp_MCZ-128897                        0.00%    passed     99.64%
  93  Purcellia_sp_MCZ-129493                        0.05%    passed     99.73%
  94  Purcellia_sp_MCZ-129494                        0.10%    passed     99.45%
  95  Rakaia_antipodiana_MCZ-134580                  0.05%    passed     99.74%
  96  Rakaia_australis_MCZ-134592                    1.98%    passed     99.70%
  97  Rakaia_collaris_MCZ-134574                     0.00%    passed     99.92%
  98  Rakaia_digitata_MCZ-134571                     0.00%    passed     99.69%
  99  Rakaia_dorothea_MCZ-134577                     0.00%    passed     99.99%
 100  Rakaia_florensis_MCZ-134588                    0.00%    passed     99.86%
 101  Rakaia_lindsayi_MCZ-134598                     0.00%    passed     99.98%
 102  Rakaia_macra_MCZ-134582                        1.49%    passed     99.64%
 103  Rakaia_media_MCZ-134581                        0.00%    passed     99.35%
 104  Rakaia_media_MCZ-134605                        4.39%    passed     95.67%
 105  Rakaia_minutissima_MCZ-29280                   0.00%    passed     98.94%
 106  Rakaia_minutissima_MCZ-134591                  0.00%    passed     99.74%
 107  Rakaia_pauli_MCZ-134576                        0.05%    passed     99.75%
 108  Rakaia_solitaria_MCZ-134585                    0.00%    passed     99.74%
 109  Rakaia_sorenseni_MCZ-134567                    0.00%    passed     99.99%
 110  Rakaia_stewartiensis_MCZ-134599                0.00%    passed     99.74%
 111  Rakaia_uniloca_MCZ-134583                      0.24%    passed     99.96%
 112  Rakaia_uniloca_MCZ-134600                      0.00%    passed     99.96%
 113  Rakaia_sp_MCZ-35662                            0.00%    passed     99.69%
 114  Rakaia_sp_MCZ-35668                            0.14%    passed     99.76%
 115  Rakaia_sp_MCZ-100753                           0.00%    passed     99.53%
 116  Rakaia_sp_MCZ-129612                           0.00%    passed     99.99%
 117  Rakaia_sp_MCZ-129614                           0.00%    passed     99.97%
 118  Rakaia_sp_MCZ-133847                           0.00%    passed     99.98%
 119  Rakaia_sp_MCZ-133849                           0.00%    passed     99.25%
 120  Rakaia_sp_MCZ-134568                          39.23%    passed     79.59%
 121  Rakaia_sp_MCZ-134575                           0.00%    passed     99.91%
 122  Rakaia_sp_MCZ-134584                           0.00%    passed     99.99%
****  TOTAL                                          2.28%  0 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: Aoraki_denticulata_denticulata_MCZ-134659_1 is identical to Aoraki_denticulata_denticulata_MCZ-134646 but kept for subsequent analysis
NOTE: Aoraki_granulosa_MCZ-134684 is identical to Aoraki_granulosa_MCZ-134675 but kept for subsequent analysis
NOTE: Aoraki_longitarsa_MCZ-134656_2 is identical to Aoraki_longitarsa_MCZ-134656_1 but kept for subsequent analysis
NOTE: Aoraki_longitarsa_MCZ-35660 is identical to Aoraki_longitarsa_MCZ-35659 but kept for subsequent analysis
NOTE: Chileogovea_jocasta_MCZ-134714 is identical to Chileogovea_jocasta_MCZ-134713 but kept for subsequent analysis
NOTE: Karripurcellia_peckorum_MCZ-134719 is identical to Karripurcellia_harveyi_MCZ-132345 but kept for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134741 is identical to Neopurcellia_salmoni_MCZ-133839 but kept for subsequent analysis
NOTE: Parapurcellia_monticola_MCZ-60357_2 is identical to Parapurcellia_monticola_MCZ-60357_1 but kept for subsequent analysis
NOTE: Parapurcellia_silvicola_MCZ-134742_2 is identical to Parapurcellia_silvicola_MCZ-134742_1 but kept for subsequent analysis
NOTE: Pettalus_sp_MCZ-132359 is identical to Pettalus_sp_MCZ-132354 but kept for subsequent analysis
NOTE: Purcellia_griswoldi_MCZ-134756 is identical to Purcellia_griswoldi_MCZ-128898 but kept for subsequent analysis
NOTE: Purcellia_illustrans_MCZ-128896 is identical to Purcellia_illustrans_MCZ-60635 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-35662 is identical to Rakaia_digitata_MCZ-134571 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-129612 is identical to Rakaia_dorothea_MCZ-134577 but kept for subsequent analysis
NOTE: 8 identical sequences (see below) will be ignored for subsequent analysis
NOTE: Aoraki_denticulata_major_MCZ-134644 (identical to Aoraki_denticulata_denticulata_MCZ-134646) is ignored but added at the end
NOTE: Chileogovea_jocasta_MCZ-134715 (identical to Chileogovea_jocasta_MCZ-134713) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134720 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134721 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134725 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Parapurcellia_monticola_MCZ-134751 (identical to Parapurcellia_monticola_MCZ-60357_1) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-134754 (identical to Purcellia_illustrans_MCZ-60635) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-134584 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end

For your convenience alignment with unique sequences printed to Pettalidae_28S_mafft_BMGE.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.010 seconds
NOTE: ModelFinder requires 22 MB RAM!
ModelFinder will test 286 DNA models (sample size: 2075) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            10147.306    225 20744.612    20799.615    22013.098
  2  JC+I          9564.013     226 19580.025    19635.547    20854.149
  3  JC+G4         9510.700     226 19473.401    19528.923    20747.525
  4  JC+I+G4       9433.940     227 19321.881    19377.924    20601.643
  5  JC+R2         9437.615     227 19329.231    19385.274    20608.992
  6  JC+R3         9403.914     229 19265.828    19322.923    20556.865
  7  JC+R4         9393.054     231 19248.107    19306.264    20550.420
  8  JC+R5         9381.110     233 19228.219    19287.450    20541.807
  9  JC+R6         9377.845     235 19225.691    19286.006    20550.554
 14  F81+F         10167.534    228 20791.068    20847.635    22076.467
 15  F81+F+I       9587.893     229 19633.785    19690.880    20924.822
 16  F81+F+G4      9536.185     229 19530.369    19587.464    20821.407
 17  F81+F+I+G4    9461.879     230 19383.759    19441.383    20680.433
 18  F81+F+R2      9467.354     230 19394.709    19452.334    20691.384
 19  F81+F+R3      9434.155     232 19332.310    19391.003    20640.261
 20  F81+F+R4      9423.459     234 19314.918    19374.690    20634.144
 21  F81+F+R5      9411.676     236 19295.351    19356.213    20625.853
 22  F81+F+R6      9408.381     238 19292.762    19354.725    20634.539
 27  K2P           10021.814    226 20495.629    20551.150    21769.752
 28  K2P+I         9429.439     227 19312.879    19368.922    20592.640
 29  K2P+G4        9372.060     227 19198.120    19254.163    20477.882
 30  K2P+I+G4      9292.741     228 19041.481    19098.049    20326.880
 31  K2P+R2        9299.628     228 19055.255    19111.823    20340.655
 32  K2P+R3        9264.510     230 18989.021    19046.646    20285.696
 33  K2P+R4        9252.829     232 18969.657    19028.350    20277.608
 34  K2P+R5        9239.691     234 18947.381    19007.153    20266.607
 35  K2P+R6        9235.920     236 18943.840    19004.702    20274.341
 40  HKY+F         10034.485    229 20526.970    20584.064    21818.007
 41  HKY+F+I       9431.009     230 19322.018    19379.643    20618.693
 42  HKY+F+G4      9376.061     230 19212.122    19269.747    20508.797
 43  HKY+F+I+G4    9299.770     231 19061.540    19119.697    20363.853
 44  HKY+F+R2      9313.881     231 19089.761    19147.919    20392.074
 45  HKY+F+R3      9278.870     233 19023.740    19082.971    20337.328
 46  HKY+F+R4      9266.920     235 19003.840    19064.156    20328.704
 47  HKY+F+R5      9252.413     237 18978.826    19040.237    20314.964
 48  HKY+F+R6      9248.089     239 18974.178    19036.696    20321.592
 53  TNe           9939.875     227 20333.751    20389.794    21613.512
 54  TNe+I         9391.472     228 19238.944    19295.512    20524.344
 55  TNe+G4        9313.518     228 19083.036    19139.604    20368.435
 56  TNe+I+G4      9243.611     229 18945.221    19002.316    20236.258
 57  TNe+R2        9242.819     229 18943.638    19000.733    20234.675
 58  TNe+R3        9207.644     231 18877.287    18935.445    20179.600
 59  TNe+R4        9196.194     233 18858.388    18917.619    20171.976
 60  TNe+R5        9184.081     235 18838.162    18898.477    20163.025
 61  TNe+R6        9181.116     237 18836.231    18897.642    20172.370
 66  TN+F          9926.938     230 20313.877    20371.501    21610.551
 67  TN+F+I        9376.646     231 19215.291    19273.449    20517.604
 68  TN+F+G4       9296.127     231 19054.255    19112.412    20356.567
 69  TN+F+I+G4     9229.315     232 18922.630    18981.323    20230.581
 70  TN+F+R2       9235.456     232 18934.913    18993.605    20242.863
 71  TN+F+R3       9199.445     234 18866.889    18926.661    20186.115
 72  TN+F+R4       9187.991     236 18847.981    18908.843    20178.482
 73  TN+F+R5       9175.848     238 18827.695    18889.658    20169.472
 74  TN+F+R6       9172.729     240 18825.458    18888.534    20178.510
 79  K3P           10023.977    227 20501.953    20557.997    21781.715
 80  K3P+I         9430.304     228 19316.607    19373.175    20602.006
 81  K3P+G4        9372.557     228 19201.113    19257.681    20486.512
 82  K3P+I+G4      9292.690     229 19043.379    19100.474    20334.416
 83  K3P+R2        9299.802     229 19057.604    19114.699    20348.641
 84  K3P+R3        9264.385     231 18990.770    19048.927    20293.082
 85  K3P+R4        9252.204     233 18970.408    19029.639    20283.996
 86  K3P+R5        9238.775     235 18947.550    19007.866    20272.414
 87  K3P+R6        9235.042     237 18944.084    19005.495    20280.223
 92  K3Pu+F        10035.881    230 20531.763    20589.387    21828.437
 93  K3Pu+F+I      9430.445     231 19322.890    19381.047    20625.202
 94  K3Pu+F+G4     9374.950     231 19211.900    19270.058    20514.213
 95  K3Pu+F+I+G4   9298.272     232 19060.544    19119.237    20368.494
 96  K3Pu+F+R2     9312.902     232 19089.805    19148.497    20397.755
 97  K3Pu+F+R3     9277.563     234 19023.126    19082.898    20342.351
 98  K3Pu+F+R4     9265.197     236 19002.394    19063.256    20332.896
 99  K3Pu+F+R5     9251.029     238 18978.059    19040.022    20319.835
100  K3Pu+F+R6     9246.694     240 18973.388    19036.463    20326.440
105  TPM2+F        10020.376    230 20500.753    20558.377    21797.428
106  TPM2+F+I      9405.143     231 19272.287    19330.444    20574.599
107  TPM2+F+G4     9348.743     231 19159.487    19217.644    20461.799
108  TPM2+F+I+G4   9275.841     232 19015.682    19074.375    20323.632
109  TPM2+F+R2     9295.783     232 19055.565    19114.258    20363.515
110  TPM2+F+R3     9260.964     234 18989.927    19049.699    20309.153
111  TPM2+F+R4     9248.509     236 18969.018    19029.880    20299.519
112  TPM2+F+R5     9233.685     238 18943.371    19005.333    20285.147
113  TPM2+F+R6     9228.853     240 18937.707    19000.782    20290.759
118  TPM2u+F       10020.387    230 20500.774    20558.399    21797.449
119  TPM2u+F+I     9405.153     231 19272.305    19330.463    20574.618
120  TPM2u+F+G4    9348.751     231 19159.502    19217.659    20461.814
121  TPM2u+F+I+G4  9275.826     232 19015.652    19074.345    20323.603
122  TPM2u+F+R2    9295.792     232 19055.584    19114.276    20363.534
123  TPM2u+F+R3    9260.966     234 18989.931    19049.703    20309.157
124  TPM2u+F+R4    9248.498     236 18968.997    19029.859    20299.498
125  TPM2u+F+R5    9233.657     238 18943.314    19005.277    20285.091
126  TPM2u+F+R6    9228.791     240 18937.582    19000.657    20290.634
131  TPM3+F        10010.457    230 20480.915    20538.540    21777.590
132  TPM3+F+I      9397.502     231 19257.003    19315.160    20559.316
133  TPM3+F+G4     9340.774     231 19143.549    19201.706    20445.861
134  TPM3+F+I+G4   9267.922     232 18999.844    19058.536    20307.794
135  TPM3+F+R2     9289.180     232 19042.360    19101.052    20350.310
136  TPM3+F+R3     9253.392     234 18974.784    19034.556    20294.010
137  TPM3+F+R4     9240.814     236 18953.628    19014.490    20284.129
138  TPM3+F+R5     9226.224     238 18928.448    18990.411    20270.225
139  TPM3+F+R6     9221.481     240 18922.962    18986.037    20276.014
144  TPM3u+F       10010.460    230 20480.920    20538.545    21777.595
145  TPM3u+F+I     9397.505     231 19257.009    19315.167    20559.322
146  TPM3u+F+G4    9340.776     231 19143.553    19201.710    20445.865
147  TPM3u+F+I+G4  9267.915     232 18999.831    19058.524    20307.781
148  TPM3u+F+R2    9289.182     232 19042.364    19101.057    20350.314
149  TPM3u+F+R3    9253.392     234 18974.784    19034.556    20294.009
150  TPM3u+F+R4    9240.802     236 18953.603    19014.465    20284.104
151  TPM3u+F+R5    9226.207     238 18928.414    18990.377    20270.190
152  TPM3u+F+R6    9221.439     240 18922.877    18985.953    20275.929
157  TIMe          9939.887     228 20335.773    20392.341    21621.173
158  TIMe+I        9391.461     229 19240.922    19298.017    20531.959
159  TIMe+G4       9313.478     229 19084.955    19142.050    20375.993
160  TIMe+I+G4     9243.664     230 18947.328    19004.952    20244.002
161  TIMe+R2       9242.737     230 18945.473    19003.098    20242.148
162  TIMe+R3       9207.541     232 18879.082    18937.775    20187.032
163  TIMe+R4       9195.839     234 18859.678    18919.449    20178.903
164  TIMe+R5       9183.652     236 18839.304    18900.166    20169.805
165  TIMe+R6       9180.678     238 18837.356    18899.319    20179.132
170  TIM+F         9926.488     231 20314.976    20373.133    21617.289
171  TIM+F+I       9375.636     232 19215.272    19273.965    20523.222
172  TIM+F+G4      9295.058     232 19054.116    19112.809    20362.067
173  TIM+F+I+G4    9228.286     233 18922.572    18981.803    20236.160
174  TIM+F+R2      9234.591     233 18935.183    18994.413    20248.770
175  TIM+F+R3      9198.512     235 18867.024    18927.340    20191.887
176  TIM+F+R4      9186.854     237 18847.708    18909.119    20183.846
177  TIM+F+R5      9174.629     239 18827.258    18889.775    20174.672
178  TIM+F+R6      9171.492     241 18824.984    18888.619    20183.673
183  TIM2e         9934.913     228 20325.826    20382.394    21611.225
184  TIM2e+I       9383.391     229 19224.782    19281.877    20515.819
185  TIM2e+G4      9303.994     229 19065.987    19123.082    20357.024
186  TIM2e+I+G4    9236.499     230 18932.999    18990.623    20229.673
187  TIM2e+R2      9237.776     230 18935.552    18993.177    20232.227
188  TIM2e+R3      9203.238     232 18870.476    18929.169    20178.427
189  TIM2e+R4      9191.752     234 18851.504    18911.276    20170.730
190  TIM2e+R5      9179.781     236 18831.562    18892.424    20162.063
191  TIM2e+R6      9176.820     238 18829.640    18891.603    20171.417
196  TIM2+F        9911.426     231 20284.851    20343.009    21587.164
197  TIM2+F+I      9350.813     232 19165.626    19224.319    20473.576
198  TIM2+F+G4     9268.259     232 19000.519    19059.211    20308.469
199  TIM2+F+I+G4   9204.716     233 18875.431    18934.662    20189.019
200  TIM2+F+R2     9215.960     233 18897.921    18957.151    20211.509
201  TIM2+F+R3     9180.867     235 18831.735    18892.050    20156.598
202  TIM2+F+R4     9169.424     237 18812.847    18874.258    20148.986
203  TIM2+F+R5     9157.281     239 18792.562    18855.080    20139.976
204  TIM2+F+R6     9154.045     241 18790.090    18853.726    20148.780
209  TIM3e         9926.637     228 20309.273    20365.841    21594.673
210  TIM3e+I       9371.615     229 19201.229    19258.324    20492.266
211  TIM3e+G4      9300.221     229 19058.442    19115.537    20349.479
212  TIM3e+I+G4    9230.698     230 18921.395    18979.020    20218.070
213  TIM3e+R2      9233.073     230 18926.145    18983.770    20222.820
214  TIM3e+R3      9198.125     232 18860.249    18918.942    20168.200
215  TIM3e+R4      9186.639     234 18841.277    18901.049    20160.503
216  TIM3e+R5      9174.661     236 18821.322    18882.184    20151.823
217  TIM3e+R6      9171.662     238 18819.324    18881.287    20161.100
222  TIM3+F        9900.322     231 20262.644    20320.801    21564.957
223  TIM3+F+I      9342.750     232 19149.501    19208.194    20457.451
224  TIM3+F+G4     9263.847     232 18991.695    19050.388    20299.645
225  TIM3+F+I+G4   9198.939     233 18863.879    18923.110    20177.467
226  TIM3+F+R2     9211.777     233 18889.555    18948.786    20203.143
227  TIM3+F+R3     9175.460     235 18820.919    18881.234    20145.782
228  TIM3+F+R4     9164.048     237 18802.096    18863.507    20138.234
229  TIM3+F+R5     9152.055     239 18782.109    18844.627    20129.524
230  TIM3+F+R6     9148.836     241 18779.671    18843.307    20138.361
235  TVMe          10005.732    229 20469.465    20526.560    21760.502
236  TVMe+I        9401.195     230 19262.390    19320.015    20559.065
237  TVMe+G4       9348.135     230 19156.270    19213.895    20452.945
238  TVMe+I+G4     9272.538     231 19007.076    19065.233    20309.388
239  TVMe+R2       9284.822     231 19031.644    19089.802    20333.957
240  TVMe+R3       9250.108     233 18966.216    19025.447    20279.804
241  TVMe+R4       9237.894     235 18945.789    19006.104    20270.652
242  TVMe+R5       9224.222     237 18922.444    18983.855    20258.583
243  TVMe+R6       9220.102     239 18918.204    18980.722    20265.618
248  TVM+F         9994.451     232 20452.903    20511.595    21760.853
249  TVM+F+I       9370.976     233 19207.952    19267.183    20521.540
250  TVM+F+G4      9313.411     233 19092.821    19152.052    20406.409
251  TVM+F+I+G4    9244.269     234 18956.539    19016.311    20275.765
252  TVM+F+R2      9270.970     234 19009.940    19069.712    20329.166
253  TVM+F+R3      9235.537     236 18943.074    19003.936    20273.575
254  TVM+F+R4      9222.759     238 18921.519    18983.482    20263.295
255  TVM+F+R5      9207.419     240 18894.838    18957.913    20247.890
256  TVM+F+R6      9202.122     242 18888.245    18952.443    20252.572
261  SYM           9921.380     230 20302.760    20360.384    21599.434
262  SYM+I         9362.927     231 19187.854    19246.011    20490.166
263  SYM+G4        9290.606     231 19043.213    19101.370    20345.525
264  SYM+I+G4      9223.526     232 18911.051    18969.744    20219.002
265  SYM+R2        9227.920     232 18919.840    18978.533    20227.790
266  SYM+R3        9193.615     234 18855.230    18915.002    20174.456
267  SYM+R4        9182.322     236 18836.644    18897.505    20167.145
268  SYM+R5        9170.534     238 18817.068    18879.031    20158.844
269  SYM+R6        9167.591     240 18815.183    18878.258    20168.235
274  GTR+F         9884.703     233 20235.406    20294.637    21548.994
275  GTR+F+I       9316.707     234 19101.413    19161.185    20420.639
276  GTR+F+G4      9236.365     234 18940.731    19000.502    20259.956
277  GTR+F+I+G4    9174.524     235 18819.049    18879.364    20143.912
278  GTR+F+R2      9192.261     235 18854.522    18914.838    20179.386
279  GTR+F+R3      9156.856     237 18787.713    18849.124    20123.851
280  GTR+F+R4      9145.685     239 18769.370    18831.888    20116.785
281  GTR+F+R5      9133.697     241 18749.394    18813.029    20108.083
282  GTR+F+R6      9130.395     243 18746.789    18811.554    20116.754
Akaike Information Criterion:           GTR+F+R6
Corrected Akaike Information Criterion: GTR+F+R6
Bayesian Information Criterion:         GTR+F+R5
Best-fit model: GTR+F+R5 chosen according to BIC

All model information printed to Pettalidae_28S_mafft_BMGE.fasta.model.gz
CPU time for ModelFinder: 74.248 seconds (0h:1m:14s)
Wall-clock time for ModelFinder: 74.592 seconds (0h:1m:14s)
Generating 1000 samples for ultrafast bootstrap (seed: 13425)...

NOTE: 12 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -9833.272
2. Current log-likelihood: -9204.580
3. Current log-likelihood: -9177.811
4. Current log-likelihood: -9172.607
5. Current log-likelihood: -9168.094
6. Current log-likelihood: -9162.492
7. Current log-likelihood: -9156.219
8. Current log-likelihood: -9151.316
9. Current log-likelihood: -9147.934
10. Current log-likelihood: -9145.511
11. Current log-likelihood: -9143.692
12. Current log-likelihood: -9142.124
13. Current log-likelihood: -9140.768
14. Current log-likelihood: -9139.650
15. Current log-likelihood: -9138.852
16. Current log-likelihood: -9138.237
17. Current log-likelihood: -9137.766
18. Current log-likelihood: -9137.397
19. Current log-likelihood: -9137.099
20. Current log-likelihood: -9136.851
21. Current log-likelihood: -9136.640
22. Current log-likelihood: -9136.457
23. Current log-likelihood: -9136.298
24. Current log-likelihood: -9136.156
25. Current log-likelihood: -9136.031
26. Current log-likelihood: -9135.918
27. Current log-likelihood: -9135.817
Optimal log-likelihood: -9135.723
Rate parameters:  A-C: 0.84548  A-G: 1.29680  A-T: 1.88486  C-G: 0.40708  C-T: 4.99570  G-T: 1.00000
Base frequencies:  A: 0.209  C: 0.267  G: 0.333  T: 0.190
Site proportion and rates:  (0.804,0.165) (0.029,0.554) (0.037,2.905) (0.088,2.986) (0.042,11.503)
Parameters optimization took 27 rounds (7.244 sec)
Computing ML distances based on estimated model parameters... 0.100 sec
Computing BIONJ tree...
0.040 seconds
Log-likelihood of BIONJ tree: -9168.569
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 1.082 second
Computing log-likelihood of 98 initial trees ... 3.282 seconds
Current best score: -9111.792

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -9105.939
Iteration 10 / LogL: -9115.087 / Time: 0h:0m:17s
Iteration 20 / LogL: -9107.746 / Time: 0h:0m:22s
Finish initializing candidate tree set (20)
Current best tree score: -9105.939 / CPU time: 14.494
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 24: -9105.745
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 25: -9103.291
Iteration 30 / LogL: -9103.971 / Time: 0h:0m:28s (0h:1m:32s left)
Iteration 40 / LogL: -9105.210 / Time: 0h:0m:33s (0h:1m:13s left)
Iteration 50 / LogL: -9104.419 / Time: 0h:0m:38s (0h:0m:58s left)
Log-likelihood cutoff on original alignment: -9135.124
Iteration 60 / LogL: -9104.071 / Time: 0h:0m:44s (0h:0m:48s left)
Iteration 70 / LogL: -9104.345 / Time: 0h:0m:49s (0h:0m:39s left)
Iteration 80 / LogL: -9109.466 / Time: 0h:0m:54s (0h:0m:31s left)
BETTER TREE FOUND at iteration 86: -9103.289
Iteration 90 / LogL: -9104.157 / Time: 0h:1m:0s (0h:1m:4s left)
Iteration 100 / LogL: -9104.018 / Time: 0h:1m:5s (0h:0m:56s left)
Log-likelihood cutoff on original alignment: -9135.124
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.995
BETTER TREE FOUND at iteration 104: -9103.288
Iteration 110 / LogL: -9110.890 / Time: 0h:1m:12s (0h:1m:2s left)
Iteration 120 / LogL: -9104.933 / Time: 0h:1m:19s (0h:0m:55s left)
Iteration 130 / LogL: -9104.077 / Time: 0h:1m:24s (0h:0m:48s left)
BETTER TREE FOUND at iteration 137: -9103.287
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 138: -9103.038
Iteration 140 / LogL: -9103.041 / Time: 0h:1m:31s (0h:1m:4s left)
Iteration 150 / LogL: -9104.188 / Time: 0h:1m:36s (0h:0m:57s left)
Log-likelihood cutoff on original alignment: -9135.124
Iteration 160 / LogL: -9103.742 / Time: 0h:1m:41s (0h:0m:49s left)
Iteration 170 / LogL: -9103.153 / Time: 0h:1m:47s (0h:0m:43s left)
Iteration 180 / LogL: -9105.727 / Time: 0h:1m:53s (0h:0m:36s left)
Iteration 190 / LogL: -9103.744 / Time: 0h:1m:58s (0h:0m:30s left)
Iteration 200 / LogL: -9103.897 / Time: 0h:2m:4s (0h:0m:23s left)
Log-likelihood cutoff on original alignment: -9135.124
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.996
Iteration 210 / LogL: -9103.040 / Time: 0h:2m:9s (0h:0m:55s left)
BETTER TREE FOUND at iteration 218: -9103.036
Iteration 220 / LogL: -9104.603 / Time: 0h:2m:15s (0h:1m:0s left)
Iteration 230 / LogL: -9103.701 / Time: 0h:2m:20s (0h:0m:54s left)
Iteration 240 / LogL: -9113.057 / Time: 0h:2m:26s (0h:0m:47s left)
BETTER TREE FOUND at iteration 247: -9103.036
Iteration 250 / LogL: -9120.711 / Time: 0h:2m:32s (0h:0m:59s left)
Log-likelihood cutoff on original alignment: -9135.281
Iteration 260 / LogL: -9103.804 / Time: 0h:2m:38s (0h:0m:53s left)
Iteration 270 / LogL: -9104.441 / Time: 0h:2m:43s (0h:0m:46s left)
BETTER TREE FOUND at iteration 278: -9103.034
Iteration 280 / LogL: -9103.697 / Time: 0h:2m:49s (0h:0m:59s left)
Iteration 290 / LogL: -9111.172 / Time: 0h:2m:54s (0h:0m:53s left)
Iteration 300 / LogL: -9107.479 / Time: 0h:3m:0s (0h:0m:47s left)
Log-likelihood cutoff on original alignment: -9135.281
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.998
Iteration 310 / LogL: -9106.584 / Time: 0h:3m:6s (0h:0m:54s left)
Iteration 320 / LogL: -9103.741 / Time: 0h:3m:12s (0h:0m:48s left)
Iteration 330 / LogL: -9104.147 / Time: 0h:3m:17s (0h:0m:42s left)
Iteration 340 / LogL: -9103.896 / Time: 0h:3m:23s (0h:0m:36s left)
Iteration 350 / LogL: -9104.572 / Time: 0h:3m:28s (0h:0m:29s left)
Log-likelihood cutoff on original alignment: -9135.281
Iteration 360 / LogL: -9103.137 / Time: 0h:3m:35s (0h:0m:23s left)
BETTER TREE FOUND at iteration 366: -9103.033
Iteration 370 / LogL: -9111.512 / Time: 0h:3m:40s (0h:0m:57s left)
BETTER TREE FOUND at iteration 380: -9103.031
Iteration 380 / LogL: -9103.031 / Time: 0h:3m:46s (0h:0m:59s left)
BETTER TREE FOUND at iteration 388: -9103.031
Iteration 390 / LogL: -9104.319 / Time: 0h:3m:52s (0h:0m:58s left)
Iteration 400 / LogL: -9109.339 / Time: 0h:3m:57s (0h:0m:52s left)
Log-likelihood cutoff on original alignment: -9135.533
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
BETTER TREE FOUND at iteration 401: -9103.030
Iteration 410 / LogL: -9121.455 / Time: 0h:4m:3s (0h:0m:54s left)
Iteration 420 / LogL: -9104.367 / Time: 0h:4m:9s (0h:0m:48s left)
Iteration 430 / LogL: -9103.032 / Time: 0h:4m:15s (0h:0m:42s left)
Iteration 440 / LogL: -9111.854 / Time: 0h:4m:20s (0h:0m:36s left)
BETTER TREE FOUND at iteration 448: -9103.029
Iteration 450 / LogL: -9104.474 / Time: 0h:4m:26s (0h:0m:58s left)
Log-likelihood cutoff on original alignment: -9135.533
Iteration 460 / LogL: -9103.036 / Time: 0h:4m:32s (0h:0m:52s left)
Iteration 470 / LogL: -9103.690 / Time: 0h:4m:38s (0h:0m:46s left)
Iteration 480 / LogL: -9117.594 / Time: 0h:4m:43s (0h:0m:40s left)
Iteration 490 / LogL: -9103.654 / Time: 0h:4m:49s (0h:0m:34s left)
Iteration 500 / LogL: -9104.750 / Time: 0h:4m:55s (0h:0m:28s left)
Log-likelihood cutoff on original alignment: -9135.533
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
Iteration 510 / LogL: -9117.838 / Time: 0h:5m:1s (0h:0m:53s left)
Iteration 520 / LogL: -9106.296 / Time: 0h:5m:7s (0h:0m:47s left)
Iteration 530 / LogL: -9103.029 / Time: 0h:5m:12s (0h:0m:41s left)
Iteration 540 / LogL: -9129.250 / Time: 0h:5m:18s (0h:0m:35s left)
TREE SEARCH COMPLETED AFTER 549 ITERATIONS / Time: 0h:5m:23s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -9103.029
2. Current log-likelihood: -9102.990
3. Current log-likelihood: -9102.954
4. Current log-likelihood: -9102.923
5. Current log-likelihood: -9102.894
6. Current log-likelihood: -9102.868
7. Current log-likelihood: -9102.844
8. Current log-likelihood: -9102.823
9. Current log-likelihood: -9102.803
Optimal log-likelihood: -9102.795
Rate parameters:  A-C: 0.86172  A-G: 1.33852  A-T: 1.96097  C-G: 0.42318  C-T: 5.29400  G-T: 1.00000
Base frequencies:  A: 0.209  C: 0.267  G: 0.333  T: 0.190
Site proportion and rates:  (0.833,0.182) (0.006,0.609) (0.091,3.339) (0.038,3.340) (0.033,12.629)
Parameters optimization took 9 rounds (2.183 sec)
BEST SCORE FOUND : -9102.795

Testing tree branches by SH-like aLRT with 1000 replicates...
5.547 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Pettalidae_28S_mafft_BMGE.fasta.splits.nex
Total tree length: 0.866

Total number of iterations: 549
CPU time used for tree search: 313.960 sec (0h:5m:13s)
Wall-clock time used for tree search: 316.185 sec (0h:5m:16s)
Total CPU time used: 329.456 sec (0h:5m:29s)
Total wall-clock time used: 331.939 sec (0h:5m:31s)

Computing bootstrap consensus tree...
Reading input file Pettalidae_28S_mafft_BMGE.fasta.splits.nex...
114 taxa and 977 splits.
Consensus tree written to Pettalidae_28S_mafft_BMGE.fasta.contree
Reading input trees file Pettalidae_28S_mafft_BMGE.fasta.contree
Log-likelihood of consensus tree: -9102.850

Analysis results written to: 
  IQ-TREE report:                Pettalidae_28S_mafft_BMGE.fasta.iqtree
  Maximum-likelihood tree:       Pettalidae_28S_mafft_BMGE.fasta.treefile
  Likelihood distances:          Pettalidae_28S_mafft_BMGE.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Pettalidae_28S_mafft_BMGE.fasta.splits.nex
  Consensus tree:                Pettalidae_28S_mafft_BMGE.fasta.contree
  Screen log file:               Pettalidae_28S_mafft_BMGE.fasta.log

Date and Time: Wed Jun 15 23:20:02 2022
